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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93929332_93930703_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
93929332 - 93930703
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGCACTGAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTATCCATATTT
Flanking Amino Acid:
DPVEGEAFTDVSPNARTVTV
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
51.6
0.04
1.2
52.9
40.5
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
60.9
0.42
1.9
82.01
39.4

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577