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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93930974_93941365_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93930974 - 93941365
Intron Length:
10392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAG
U12 Branch Point Sequence:
ACTTCAGTGACA
Flanking Amino Acid:
ALSGEGETLEERGSPRNLVT
Intron Amino Acid Position:
899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
54.6
0.12
1.5
65.3
41.5
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
48.6
-0.1
2.3
65.7
40.7

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577