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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93941639_93942585_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93941639 - 93942585
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTGCTTCAACT
Flanking Amino Acid:
ALNGYAKTDEVRGTPRNLRV
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.7
0.69
0.9
76.7
36.8
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
63.7
0.51
1.7
79.65
42.8

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577