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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93942859_93945092_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93942859 - 93945092
Intron Length:
2234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TATTTACAAATT
Flanking Amino Acid:
ALDGEETTLEVKGAPRNLRI
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.2
39.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
88.5
0.87
0.7
85.2
29.1
Minor 5ss
47
-0.3
3.1
66.9
44.7
Minor BPS
46.2
-0.2
2.1
70.61
40.4

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577