Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93945366_93946808_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

93945366 - 93946808

Intron Length:

1443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TATTTCCATACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATGTCTTATCT

Flanking Amino Acid:

EQELAAIRKKSYIPAKNMVF

Intron Amino Acid Position:

626

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

83.5

27.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

79.9

0.67

0.9

74.1

35.4

Minor 5ss

38.5

-1.3

2.8

50.4

39.3

Minor BPS

64.2

0.52

1.7

80.51

41.4

Associated Gene:

Gene:

COL12A1

Ensembl Gene ID:

ENSAPLG00000012959

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013741

93868544 - 93956120

87577