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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93947412_93947635_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93947412 - 93947635
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
EKTQQVKVQVECSRGVDVKA
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
37.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577