Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93949914_93950648_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

93949914 - 93950648

Intron Length:

735

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

GTGTGTATTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGTAT

U12 Branch Point Sequence:

TGTGTGTGTATT

Flanking Amino Acid:

EEKKVETQLQRCSISATTDL

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

75.3

35.6

Major BPS

56.3

0.16

1.5

57.4

49.1

Major PPT

72.7

0.51

62.7

47.3

Minor 5ss

41.4

-1

3.1

56.7

41.9

Minor BPS

40.2

-0.6

2.3

60.39

43.9

Associated Gene:

Gene:

COL12A1

Ensembl Gene ID:

ENSAPLG00000012959

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013741

93868544 - 93956120

87577