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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93952997_93956059_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93952997 - 93956059
Intron Length:
3063

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAACTTTTAAAC
Flanking Amino Acid:
ALDADALLHLVNPPSDLNFT
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
92
25.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.6
0.6
0.9
70
40.2
Minor 5ss
27.1
-2.6
3.8
42.5
44.3
Minor BPS
53.5
0.09
1.3
57.52
34

Associated Gene:

Gene:
COL12A1
Ensembl Gene ID:
ENSAPLG00000012959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013741
93868544 - 93956120
87577