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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93976666_93977997_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93976666 - 93977997
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGAGT
5'SS Class:
major
3'SS Sequence:
TTGTTTCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTATTTAAATA
Flanking Amino Acid:
RVPEKQKLFQEDNGLPVYLK
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
68
42.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75
0.56
0.9
75.7
34.2
Minor 5ss
40.1
-1.1
3.2
57.9
46.3
Minor BPS
52.3
0.07
1.6
63.8
37.1

Associated Gene:

Gene:
COX7A2
Ensembl Gene ID:
ENSAPLG00000013886
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014460
93975736 - 93979108
3373