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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93978088_93979090_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93978088 - 93979090
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TCTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTCCTAAAAT
Flanking Amino Acid:
MWRSLLSLRQISQRTI
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.3
0.82
0.7
85.7
27.2
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
69.4
0.69
1.8
86.3
39.3

Associated Gene:

Gene:
COX7A2
Ensembl Gene ID:
ENSAPLG00000013886
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014460
93975736 - 93979108
3373