About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93986264_93987674_R

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
93986264 - 93987674
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ATATGTGTCTCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGCTTCTTATTT
Flanking Amino Acid:
AGKYSLEITYNYPVHSFDGR
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
56.4
43.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
69.4
0.44
1
65.8
44.6
Minor 5ss
97.5
1.6
0.6
95.7
13.5
Minor BPS
63
0.49
1.6
75.8
41.6

Associated Gene:

Gene:
TMEM30A
Ensembl Gene ID:
ENSAPLG00000013903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014516
93984755 - 93997535
12781