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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93991349_93991993_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93991349 - 93991993
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATTGTGTGAATT
Flanking Amino Acid:
INFTLEHSFESNVFMYYGLS
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
77.9
0.63
0.8
72.9
32
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
47.6
-0.1
2.2
70.32
41.3

Associated Gene:

Gene:
TMEM30A
Ensembl Gene ID:
ENSAPLG00000013903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014516
93984755 - 93997535
12781