About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93992111_93997223_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93992111 - 93997223
Intron Length:
5113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTCTGTTACA
Flanking Amino Acid:
VTSNNIREYEIDYTGTDPSS
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
78
38.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
32.8
-2
3
41.6
45
Minor BPS
57.4
0.23
2.3
78.96
37.6

Associated Gene:

Gene:
TMEM30A
Ensembl Gene ID:
ENSAPLG00000013903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014516
93984755 - 93997535
12781