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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94004036_94112142_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
94004036 - 94112142
Intron Length:
108107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
GCTTCATAAAAC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75.9
34
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
49.1
-0.1
2.4
64.8
41.7
Minor BPS
48.6
-0.1
2
61.65
43.2

Associated Gene:

Gene:
FILIP1
Ensembl Gene ID:
ENSAPLG00000014226
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014840
94004035 - 94206910
202876