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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94115043_94117367_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94115043 - 94117367
Intron Length:
2325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATCTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CCTCTCTTATCT
Flanking Amino Acid:
TSSTRGTQSVPCADSLNSPE
Intron Amino Acid Position:
1145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
42.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
77.4
0.62
0.9
70.6
39.6
Minor 5ss
39.9
-1.1
2.9
49
41.5
Minor BPS
59
0.36
1.7
72.48
44.6

Associated Gene:

Gene:
FILIP1
Ensembl Gene ID:
ENSAPLG00000014226
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014840
94004035 - 94206910
202876