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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94144989_94146752_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94144989 - 94146752
Intron Length:
1764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTACAACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TTTCCTACAACC
Flanking Amino Acid:
EDVYEKPISELDRLEEKQKE
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80
32.5
Major BPS
73
0.57
1
73.6
28.6
Major PPT
64
0.32
1
55.1
38.9
Minor 5ss
36.2
-1.6
3
50.8
45.2
Minor BPS
55.7
0.16
1.8
73.44
36.9

Associated Gene:

Gene:
FILIP1
Ensembl Gene ID:
ENSAPLG00000014226
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014840
94004035 - 94206910
202876