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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94146927_94163437_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94146927 - 94163437
Intron Length:
16511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TGCCATGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGGTACTGATTT
Flanking Amino Acid:
LLSIMEGELQAREDVIHMLK
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
71.6
0.49
1
64
41.4
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
48
-0
1.9
66.77
43.8

Associated Gene:

Gene:
FILIP1
Ensembl Gene ID:
ENSAPLG00000014226
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014840
94004035 - 94206910
202876