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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94163717_94179034_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
94163717 - 94179034
Intron Length:
15318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTGTTTATAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
55.4
0.17
1.7
68.87
37.5

Associated Gene:

Gene:
FILIP1
Ensembl Gene ID:
ENSAPLG00000014226
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014840
94004035 - 94206910
202876