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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94382454_94383447_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94382454 - 94383447
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TATTCTTTTATT
Flanking Amino Acid:
GTLPPHVFAIADKAYRDMKV
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78.9
0.65
1
83.8
30
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
70.3
0.72
1.5
84.68
36.4

Associated Gene:

Gene:
MYO6
Ensembl Gene ID:
ENSAPLG00000002456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027124
94370302 - 94449592
79291
ENSAPLT00000002628
94370302 - 94449592
79291