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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94400097_94406946_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94400097 - 94406946
Intron Length:
6850

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCACGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTTAATA
Flanking Amino Acid:
VMLTTAGGRQRVPLKVEQAN
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
66.2
39.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.7
0.67
0.9
77.8
35.1
Minor 5ss
25.6
-2.8
4.2
38.8
46.4
Minor BPS
76.4
0.83
1
79.34
30.5

Associated Gene:

Gene:
MYO6
Ensembl Gene ID:
ENSAPLG00000002456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027124
94370302 - 94449592
79291
ENSAPLT00000002628
94370302 - 94449592
79291