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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94407105_94407441_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94407105 - 94407441
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
AGAAGTTTAACT
Flanking Amino Acid:
FIGVLDIAGFEYFEHNSFEQ
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
78.3
0.7
1
80
32.1
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
54
0.2
1.8
68.87
41.7

Associated Gene:

Gene:
MYO6
Ensembl Gene ID:
ENSAPLG00000002456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027124
94370302 - 94449592
79291
ENSAPLT00000002628
94370302 - 94449592
79291