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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94408054_94409608_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94408054 - 94409608
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATTTTTAATA
Flanking Amino Acid:
VRYVDNQDCIDLIEAKLIGV
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.7
0.67
0.9
77.8
35.1
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
76.4
0.83
1
79.34
30.5

Associated Gene:

Gene:
MYO6
Ensembl Gene ID:
ENSAPLG00000002456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027124
94370302 - 94449592
79291
ENSAPLT00000002628
94370302 - 94449592
79291