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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94410882_94413240_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94410882 - 94413240
Intron Length:
2359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATGTTA
5'SS Class:
major
3'SS Sequence:
CTTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGGCTTTTATT
Flanking Amino Acid:
HFAGAVCYETTQFVEKNNDA
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.9
38.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.6
0.91
0.7
88.8
26.8
Minor 5ss
40.9
-1
3.3
56.3
47.9
Minor BPS
57.8
0.33
1.7
74.98
42.6

Associated Gene:

Gene:
MYO6
Ensembl Gene ID:
ENSAPLG00000002456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027124
94370302 - 94449592
79291
ENSAPLT00000002628
94370302 - 94449592
79291