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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94461746_94465924_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94461746 - 94465924
Intron Length:
4179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CCATCCTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATGCCTCAATT
Flanking Amino Acid:
IDSYSLDIEPADQADPCKFM
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.5
0.64
0.8
71.8
32.5
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
62.4
0.47
1.6
76.03
40.7

Associated Gene:

Gene:
IMPG1
Ensembl Gene ID:
ENSAPLG00000002413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002418
94459180 - 94517038
57859