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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94467216_94481444_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94467216 - 94481444
Intron Length:
14229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCAAAATAGGC
Flanking Amino Acid:
EADQDSLFDQAVKIMDELES
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
89.4
0.89
0.7
85
29.8
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
35.1
-1.1
2.1
46.45
41.8

Associated Gene:

Gene:
IMPG1
Ensembl Gene ID:
ENSAPLG00000002413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002418
94459180 - 94517038
57859