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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94481986_94483166_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94481986 - 94483166
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TATCCTTTAAAA
Flanking Amino Acid:
VTIPLAGPDLEDAMGVELPL
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
89.1
0.88
0.6
87.7
22.4
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
70
0.63
1.3
75.69
34.7

Associated Gene:

Gene:
IMPG1
Ensembl Gene ID:
ENSAPLG00000002413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002418
94459180 - 94517038
57859