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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94486840_94488645_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
94486840 - 94488645
Intron Length:
1806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGATGAAATGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
AATCCTTTATCA
Flanking Amino Acid:
GFKEIHVLGFKQKKEKDGSS
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
78.3
0.7
1
80
32.1
Major PPT
49.7
-0
1.2
47.5
43.2
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
60.6
0.33
1.6
68.62
37.3

Associated Gene:

Gene:
IMPG1
Ensembl Gene ID:
ENSAPLG00000002413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002418
94459180 - 94517038
57859