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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94488705_94491095_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94488705 - 94491095
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTATACTGGATT
Flanking Amino Acid:
RQLAAKFQLQMQKIFEKLPG
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
85.1
0.79
0.7
80.9
31.3
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
58
0.33
1.7
77.81
38.3

Associated Gene:

Gene:
IMPG1
Ensembl Gene ID:
ENSAPLG00000002413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002418
94459180 - 94517038
57859