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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94491243_94494806_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94491243 - 94494806
Intron Length:
3564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTCTCCCATTT
Flanking Amino Acid:
IVNDTKTPVKELGTNTVPEL
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
83.9
28.9
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
30.4
-2.2
3.2
39
46.4
Minor BPS
45.5
-0.2
2
70.16
40.9

Associated Gene:

Gene:
IMPG1
Ensembl Gene ID:
ENSAPLG00000002413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002418
94459180 - 94517038
57859