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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94498344_94498554_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94498344 - 94498554
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATC
Flanking Amino Acid:
SQEHLEIIQRRVKHRTFQER
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
82.5
37
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83
0.74
0.8
77.3
35.9
Minor 5ss
37.8
-1.4
3.4
49.4
46.6
Minor BPS
87
1.14
0.8
89.76
24.1

Associated Gene:

Gene:
IMPG1
Ensembl Gene ID:
ENSAPLG00000002413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002418
94459180 - 94517038
57859