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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_94504301_94516372_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94504301 - 94516372
Intron Length:
12072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTATCTTTATAC
Flanking Amino Acid:
CLALQVQESRENPGKINRGE
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.1
0.86
0.8
80.9
36.4
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
56.1
0.17
1.7
65.39
39.8

Associated Gene:

Gene:
IMPG1
Ensembl Gene ID:
ENSAPLG00000002413
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002418
94459180 - 94517038
57859