About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95157009_95162006_R

Intron Information:

Intron Rank:
155125
Intron Class:
major
Intron Phase:
Intron Coordinates:
95157009 - 95162006
Intron Length:
4998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAATACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.7
0.74
0.9
76.8
37.3
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
48
-0.1
2.2
71.19
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030980
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046123
95156855 - 95168162
11308