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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95240236_95272784_R

Intron Information:

Intron Rank:
149279
Intron Class:
major
Intron Phase:
Intron Coordinates:
95240236 - 95272784
Intron Length:
32549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CACATTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATCTTCTTGAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.4
0.66
0.9
76.3
37.3
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
59.7
0.3
1.6
67.65
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027811
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036105
95237328 - 95280363
43036