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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95307706_95308728_R

Intron Information:

Intron Rank:
140132
Intron Class:
major
Intron Phase:
Intron Coordinates:
95307706 - 95308728
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGAG
5'SS Class:
major
3'SS Sequence:
CCTTGCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
GAAAGCTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
57.1
42.4
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
77.7
0.62
0.8
71.3
33.1
Minor 5ss
34.2
-1.8
3.6
46.7
48.6
Minor BPS
52
0.06
1.8
59.28
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022770
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029981
95307617 - 95317962
10346