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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95309001_95317402_R

Intron Information:

Intron Rank:
140133
Intron Class:
major
Intron Phase:
Intron Coordinates:
95309001 - 95317402
Intron Length:
8402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGAG
5'SS Class:
major
3'SS Sequence:
CTATTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTGTGTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.8
0.78
0.8
76.9
37
Minor 5ss
30.8
-2.2
3.4
35.9
42.5
Minor BPS
49.1
0.01
2.1
71.97
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022770
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029981
95307617 - 95317962
10346