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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95370916_95371939_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95370916 - 95371939
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTGAC
U12 Branch Point Sequence:
TTGTGCTGCATT
Flanking Amino Acid:
YHTPEAIDALRRQVCVAAVG
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
62.5
0.31
1.1
54.8
42.1
Major PPT
75.9
0.58
0.8
72.7
32.1
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
47.3
-0.1
2.3
72.28
45.1

Associated Gene:

Gene:
IRAK1BP1
Ensembl Gene ID:
ENSAPLG00000004376
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004489
95361199 - 95372210
11012