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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95397088_95398920_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95397088 - 95398920
Intron Length:
1833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTGCATGATC
Flanking Amino Acid:
KSSTVNQQGQAECKNNALAS
Intron Amino Acid Position:
1438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
75.1
40.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
40.1
-1.1
3.2
57.4
46.9
Minor BPS
55
0.14
2.1
74.56
36.5

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034946
95396444 - 95466563
70120
ENSAPLT00000027395
95392108 - 95492932
100825
ENSAPLT00000003708
95391000 - 95491945
100946
ENSAPLT00000046101
95391005 - 95491692
100688