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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95399703_95400185_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95399703 - 95400185
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTCA
5'SS Class:
major
3'SS Sequence:
GCTCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AGGTTTCAAATT
Flanking Amino Acid:
SSSVSSSVASSPERKRRLIK
Intron Amino Acid Position:
1288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.2
35.2
Major BPS
77.3
0.68
1
81.5
27
Major PPT
82
0.72
0.8
76
32.4
Minor 5ss
38.8
-1.3
3.1
50.7
45.6
Minor BPS
44.5
-0.3
1.8
58.68
39.2

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034946
95396444 - 95466563
70120
ENSAPLT00000027395
95392108 - 95492932
100825
ENSAPLT00000003708
95391000 - 95491945
100946
ENSAPLT00000046101
95391005 - 95491692
100688