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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95402675_95404268_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95402675 - 95404268
Intron Length:
1594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TGTTTTTTAACA
Flanking Amino Acid:
RQPVDLLEYPDYRDIIDTPM
Intron Amino Acid Position:
1183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
81.7
31.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
84.1
0.77
0.9
81
35.4
Minor 5ss
33.7
-1.9
3.4
49.9
46.4
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034946
95396444 - 95466563
70120
ENSAPLT00000027395
95392108 - 95492932
100825
ENSAPLT00000003708
95391000 - 95491945
100946
ENSAPLT00000046101
95391005 - 95491692
100688