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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95412747_95417122_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95412747 - 95417122
Intron Length:
4376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTGTTCTTACCT
Flanking Amino Acid:
DDAKHRRWNIGDRFRSVIDD
Intron Amino Acid Position:
899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
72.6
0.51
0.9
66.4
39.8
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
66.8
0.61
1.6
80.01
42.1

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003708
95391000 - 95491945
100946
ENSAPLT00000046101
95391005 - 95491692
100688
ENSAPLT00000034946
95396444 - 95466563
70120
ENSAPLT00000027395
95392108 - 95492932
100825