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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95417206_95417377_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95417206 - 95417377
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TATTGCTTATTA
Flanking Amino Acid:
GKLTGGSFTMKYHDMPDVID
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
78.2
36.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
63.4
0.3
1
63.4
42
Minor 5ss
43.7
-0.7
2.9
59.5
38.8
Minor BPS
58
0.25
2
72.3
40.1

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034946
95396444 - 95466563
70120
ENSAPLT00000027395
95392108 - 95492932
100825
ENSAPLT00000003708
95391000 - 95491945
100946
ENSAPLT00000046101
95391005 - 95491692
100688