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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95433202_95434249_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95433202 - 95434249
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTGACATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CACTTCTTGACA
Flanking Amino Acid:
GTSSTSRISRGSVSSTSEVH
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.9
80.8
27
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
70.9
0.47
0.9
67.1
38.8
Minor 5ss
39.8
-1.1
2.9
52
45.2
Minor BPS
66.1
0.5
1.3
66.32
40.4

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027395
95392108 - 95492932
100825
ENSAPLT00000003708
95391000 - 95491945
100946
ENSAPLT00000046101
95391005 - 95491692
100688
ENSAPLT00000034946
95396444 - 95466563
70120