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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95434388_95437282_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95434388 - 95437282
Intron Length:
2895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
LIPQMGVTSSGLNQVLSQQA
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046101
95391005 - 95491692
100688
ENSAPLT00000034946
95396444 - 95466563
70120
ENSAPLT00000027395
95392108 - 95492932
100825
ENSAPLT00000003708
95391000 - 95491945
100946