Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95437509_95441929_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

95437509 - 95441929

Intron Length:

4421

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGTAC

5'SS Class:

major

3'SS Sequence:

ACTTTGTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

AGGTTCTTAAAA

Flanking Amino Acid:

GFGSSSKYDKIADQMFFHSD

Intron Amino Acid Position:

380

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

63.5

37.6

Major BPS

82.2

0.8

71.9

35.8

Major PPT

82.6

0.73

0.9

37.4

Minor 5ss

35.3

-1.7

3.5

49.3

47.2

Minor BPS

65.1

0.47

1.4

67.6

38.4

Associated Gene:

Gene:

PHIP

Ensembl Gene ID:

ENSAPLG00000003512

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046101

95391005 - 95491692

100688

ENSAPLT00000034946

95396444 - 95466563

70120

ENSAPLT00000027395

95392108 - 95492932

100825

ENSAPLT00000003708

95391000 - 95491945

100946