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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_954537_956443_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
954537 - 956443
Intron Length:
1907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGGGATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTATTTATAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.3
0.46
1
66.7
44.2
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
59.8
0.31
1.6
69.6
36.2

Associated Gene:

Gene:
SPTLC3
Ensembl Gene ID:
ENSAPLG00000011146
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011600
954416 - 1047987
93572