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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95462283_95466098_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
95462283 - 95466098
Intron Length:
3816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
AATTATTTAACT
Flanking Amino Acid:
CTENLHEDTESPRPTKFTER
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
73.8
37.5
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
86.4
0.82
0.7
85.4
28
Minor 5ss
68.3
0.62
2.4
81.8
38.5
Minor BPS
73.2
0.81
1.4
84.86
34.8

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034946
95396444 - 95466563
70120