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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95462283_95467569_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95462283 - 95467569
Intron Length:
5287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAGTTGC
5'SS Class:
major
3'SS Sequence:
TCTTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
AATTATTTAACT
Flanking Amino Acid:
WLWDAGTLKINPRPTKFTER
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
68.1
38.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
86.4
0.82
0.7
85.4
28
Minor 5ss
38.6
-1.3
2.7
45.9
36.1
Minor BPS
73.2
0.81
1.4
84.86
34.8

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027395
95392108 - 95492932
100825
ENSAPLT00000003708
95391000 - 95491945
100946
ENSAPLT00000046101
95391005 - 95491692
100688