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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95468547_95480420_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95468547 - 95480420
Intron Length:
11874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TACTTACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTCTACTTACTT
Flanking Amino Acid:
FDRTGRRIFTGSDDCLVKIW
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
68
0.45
1
57.8
39
Major PPT
79.5
0.66
0.9
70.3
40
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
62.4
0.47
1.8
80.51
41.8

Associated Gene:

Gene:
PHIP
Ensembl Gene ID:
ENSAPLG00000003512
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046101
95391005 - 95491692
100688
ENSAPLT00000027395
95392108 - 95492932
100825
ENSAPLT00000003708
95391000 - 95491945
100946