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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95520396_95520693_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95520396 - 95520693
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGGTAG
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAGTAATTAATT
Flanking Amino Acid:
KGQIETVKVKGSEN*
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
57.7
43.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.5
0.78
0.7
80
25.6
Minor 5ss
34.6
-1.8
3.4
37.3
47.3
Minor BPS
58.9
0.36
1.8
75.64
40.7

Associated Gene:

Gene:
HMGN3
Ensembl Gene ID:
ENSAPLG00000003473
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024897
95520378 - 95544077
23700