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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_95523354_95523971_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95523354 - 95523971
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
AATGTCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ACATGTTTAATA
Flanking Amino Acid:
PTRRSARLSAKPAPPKPEPK
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
74.1
0.54
0.9
70.8
40.1
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
55.6
0.17
1.7
61.85
39.1

Associated Gene:

Gene:
HMGN3
Ensembl Gene ID:
ENSAPLG00000003473
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039198
95520357 - 95544077
23721
ENSAPLT00000035102
95519060 - 95544077
25018
ENSAPLT00000024897
95520378 - 95544077
23700
ENSAPLT00000003547
95520675 - 95544077
23403